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Table of Contents
Introduction to Biopython
What is Biopython?, Benefits and Applications of Biopython
0s
Installing Biopython using pip
0s
Biological data formats
0s
Sequence Manipulation and Analysis
Reading and writing Sequences
0s
Sequence objects and their properties
0s
Sequence searching and alignment
0s
Calculating sequence properties
0s
Subsetting and manipulating sequences
0s
Sequence Annotation and Features
Handling sequence annotations and metadata
0s
Extracting and modifying sequence features
0s
Parsing and working with GenBank files
0s
Visualization of sequence features
0s
Basic Sequence Analysis
Searching for sequence motifs using regular expressions
0s
Basic sequence alignment and comparison
0s
Calculation of sequence similarity and identity
0s
Finding open reading frames (ORFs)
0s
Advanced Sequence Analysis
Performing multiple sequence alignment (MSA)
0s
Sequence Motifs
0s
Introduction to Hidden Markov Models (HMMs)
0s
Phylogenetic Analysis
0s
Sequence motif discovery and pattern matching
0s
Protein structure analysis with Bio.PDB
0s
Working with Biological Databases
Retrieving data from NCBI databases
0s
Accessing and querying online biological databases
0s
Batch retrieval of sequences using Entrez
0s
Database integration and data management
0s
Automating Bioinformatics Workflows
Introduction to Automation in Bioinformatics
0s
Scripting and automating tasks with Biopython
0s
Writing efficient and reusable code
0s
Creating custom functions and modules
0s
Practical examples and case studies
0s
Biopython and NGS
Introduction to NGS data and file formats
0s
Quality control and filtering of NGS data
0s
Variant calling and analysis using Biopython
0s
Introduction to Biopython-compatible NGS tools
0s
Biopython and Genomic Data Science
Analyzing genomic data with Biopython
0s
Genomic data visualization using Biopython and Matplotlib
0s
Mining and interpreting genomic data
0s
Machine learning for Genomic data analysis
0s
Genomic Data Science workflow
0s