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Practical examples and case studies

Practical examples and case studies

Biopython Fundamentals Practical examples and case studies

Biopython Fundamentals

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Introduction to Biopython

What is Biopython?, Benefits and Applications of Biopython

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Installing Biopython using pip

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Biological data formats

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Sequence Manipulation and Analysis

Reading and writing Sequences

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Sequence objects and their properties

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Sequence searching and alignment

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Calculating sequence properties

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Subsetting and manipulating sequences

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Sequence Annotation and Features

Handling sequence annotations and metadata

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Extracting and modifying sequence features

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Parsing and working with GenBank files

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Visualization of sequence features

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Basic Sequence Analysis

Searching for sequence motifs using regular expressions

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Basic sequence alignment and comparison

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Calculation of sequence similarity and identity

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Finding open reading frames (ORFs)

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Advanced Sequence Analysis

Performing multiple sequence alignment (MSA)

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Sequence Motifs

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Introduction to Hidden Markov Models (HMMs)

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Phylogenetic Analysis

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Sequence motif discovery and pattern matching

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Protein structure analysis with Bio.PDB

Video - 00:00:00 mins

Working with Biological Databases

Retrieving data from NCBI databases

Video - 00:00:00 mins

Accessing and querying online biological databases

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Batch retrieval of sequences using Entrez

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Database integration and data management

Video - 00:00:00 mins

Automating Bioinformatics Workflows

Introduction to Automation in Bioinformatics

Video - 00:00:00 mins

Scripting and automating tasks with Biopython

Video - 00:00:00 mins

Writing efficient and reusable code

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Creating custom functions and modules

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Practical examples and case studies

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Biopython and NGS

Introduction to NGS data and file formats

Video - 00:00:00 mins

Quality control and filtering of NGS data

Video - 00:00:00 mins

Variant calling and analysis using Biopython

Video - 00:00:00 mins

Introduction to Biopython-compatible NGS tools

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Biopython and Genomic Data Science

Analyzing genomic data with Biopython

Video - 00:00:00 mins

Genomic data visualization using Biopython and Matplotlib

Video - 00:00:00 mins

Mining and interpreting genomic data

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Machine learning for Genomic data analysis

Video - 00:00:00 mins

Genomic Data Science workflow

Video - 00:00:00 mins

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